Extract the state name from the geo_loc_name column, this only makes sence for USA isolates

Usage

extract_state(data)

Arguments

data: a dataframe containing a geo_loc_name column

Value

a tibble with 2 columns, target_acc and State

Examples

klebsiella_example_dat %>% extract_state()
#> # A tibble: 200 × 2
#>    target_acc     State
#>    <chr>          <chr>
#>  1 PDT001211141.1 ""   
#>  2 PDT000434574.1 "NY" 
#>  3 PDT001009222.1 ""   
#>  4 PDT000414882.1 ""   
#>  5 PDT000431384.1 ""   
#>  6 PDT001020147.1 ""   
#>  7 PDT000875073.1 ""   
#>  8 PDT000172180.4 "OH" 
#>  9 PDT000852554.1 "NY" 
#> 10 PDT001025462.1 "IL" 
#> # ℹ 190 more rows